Track Data Hubs
 

Track data hubs are collections of external tracks that can be imported into the UCSC Genome Browser. Hub tracks show up under the hub's own blue label bar on the main browser page, as well as on the configure page. For more information, including where to host your track hub, see the User's Guide.To import a public hub click its "Connect" button below.

NOTE: Because Track Hubs are created and maintained by external sources, UCSC is not responsible for their content.

Enter search terms to find in public track hub description pages:

Filter hubs by assembly:

Clicking Connect redirects to the gateway page of the selected hub's default assembly.
Display Hub Name Description Assemblies
Mouse strain assemblies Assembly and alignment data for 16 different mouse strains plus rat. [+] mm10, rn6, 129S1_SvImJ, WSB_EiJ, SPRET_EiJ, AKR_J...
Human cellular microRNAome barCharts Evaluation of >10 billion small RNA-seq reads from 78 primary cell types and 42 cancer or immortalized cell lines from 3 main studies. hg38
Cancer Genomics Tracks TCGA and ICGC Cancer Mutations, TCGA Expression, Immune Epitopes Database (IEDB), Cancer Immunity Peptides Database, Dienstmann Variant/Cancer database, CIVIC, MyCancerGenome.org, OncoKB hg19
Porcine DNA methylation and gene transcription ERROR: getaddrinfo() error on hostName=public.hpcagrogenomics.wur.nl: Name or service not known Couldn't open http://public.hpcagrogenomics.wur.nl/ABGC/Track_Hubs/TJ_Tabasco/hub.txt Debug Help susScr3
Hippocampal DNA methylation and gene transcription ERROR: getaddrinfo() error on hostName=public.hpcagrogenomics.wur.nl: Name or service not known Couldn't open http://public.hpcagrogenomics.wur.nl/ABGC/Track_Hubs/Cognition/hub.txt Debug Help susScr3
Cancer genome polyA site & usage ERROR: getaddrinfo() error on hostName=johnlab.org: Temporary failure in name resolution Couldn't open http://johnlab.org/xpad/Hub/UCSC.txt Debug Help hg19
DASHR small ncRNA Hub ERROR: TCP non-blocking connect() to lisanwanglab.org timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://lisanwanglab.org/DASHR/tracks/hub.txt Debug Help hg19
dan_rer ZGA Hub UCSC Hub for transcripts detected via long-read seq in Zebrafish during ZGA danRer10
DNA Methylation ERROR: TCP non-blocking connect() to smithlab.usc.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://smithlab.usc.edu/trackdata/methylation/hub.txt Debug Help [+] hg38, hg19, hg18, mm9, mm10, panTro2, panTro4, ponAbe2...
ChIP-seq data track HUBs from MSC cells from GSE79815 ERROR: Couldn't open https://biochem.wisc.edu/sites/default/files/labs/pike/genome-ucsc/GSE79815_MSC_HUB/hub.txt Debug Help mm9
lncRNA in Breast Cancer ERROR: TCP non-blocking connect() to pecan.swmed.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://pecan.swmed.edu/public/breast_cancer_lncrna_pmid_26236012/hub.txt Debug Help hg19
UCD Methylation ERROR: TCP non-blocking connect() to lasallelab.genomecenter.ucdavis.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://lasallelab.genomecenter.ucdavis.edu/UCSChub/hub.txt Debug Help [+] hg19, hg18, mm10, mm9, bosTau7, bosTau6, canFam3...
CEMT (CEEHRC) ERROR: TCP non-blocking connect() to www.bcgsc.ca timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://www.bcgsc.ca/downloads/edcc/data/CEMT/hub/bcgsc_datahub.txt Debug Help hg38, hg19
Plants ERROR: TCP non-blocking connect() to genome-test.cse.ucsc.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://genome-test.cse.ucsc.edu/~hiram/hubs/Plants/hub.txt Debug Help araTha1, braRap1, ricCom1
Porcine DNA methylation ERROR: TCP non-blocking connect() to faang.abgc.asg.wur.nl timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://faang.abgc.asg.wur.nl/Track_Hubs/Chankyu/hub.txt Debug Help susScr3
CESAR Gene Mappings ERROR: TCP non-blocking connect() to bds.mpi-cbg.de timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://bds.mpi-cbg.de/hillerlab/CESAR/trackHub/hub.txt Debug Help [+] bosTau7, ailMel1, allMis1, anoCar2, calJac3...
GeneHancer enhancers GeneHancer: genome-wide integration of enhancers and target genes in GeneCards hg38, hg19
ENCODE Analysis Hub ERROR: TCP non-blocking connect() to ftp.ebi.ac.uk timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://ftp.ebi.ac.uk/pub/databases/ensembl/encode/integration_data_jan2011/hub.txt Debug Help hg19
McGill EMC (CEEHRC) ERROR: TCP non-blocking connect() to epigenomesportal.ca timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://epigenomesportal.ca/hub/hub.txt Debug Help hg19
Peptide evidences CNIO ERROR: TCP non-blocking connect() to apprisws.bioinfo.cnio.es timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://apprisws.bioinfo.cnio.es/trackHubPROTEO/hub.txt Debug Help hg38, hg19
human p53 Binding And Expression Resource (BAER) hub human p53 ChIP-seq coverage depth (tracks) & SISSRs peak calls with associated differential gene expression from published data as of May 2015 hg19
PhyloCSF Evolutionary protein-coding potential as measured by PhyloCSF hg19, hg38, mm10, galGal4, dm6, ce11
Porcine DNA methylation and gene transcription ERROR: TCP non-blocking connect() to faang.abgc.asg.wur.nl timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://faang.abgc.asg.wur.nl/Track_Hubs/TJ_Tabasco/hub.txt Debug Help susScr3
iPSCORE_RPE ERROR: Couldn't open http://flh1.ucsd.edu/RPE_public/iPSCORE_RPE/hub.txt Debug Help hg19
miRcode microRNA sites ERROR: TCP non-blocking connect() to www.mircode.org timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://www.mircode.org/ucscHub/hub.txt Debug Help hg19
GTEx RNA-seq Signal Hub ERROR: Couldn't open http://hgdownload.soe.ucsc.edu/hubs/gtex/hg19/trackDb.txt Debug Help hg19, hg38
Broad Improved Canine Annotation v1 Broad Institute CanFam3 Improved Annotation Data v1 canFam3
EcoliCompHubWtDups ERROR: Couldn't open http://genome-test.cse.ucsc.edu/~nknguyen/ecoli/publicHubs/pangenomeWithDups/hub.txt Debug Help [+] EscherichiaColi042Uid161985...
UMassMed ZHub ERROR: TCP non-blocking connect() to zlab-trackhub.umassmed.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://zlab-trackhub.umassmed.edu/shulhah/hub.txt Debug Help hg19
CPTAC Hub v1 ERROR: TCP non-blocking connect() to openslice.fenyolab.org timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://openslice.fenyolab.org/tracks/CPTAC/cptac/v1/hub.txt Debug Help hg19
Primate x4 NeuroDiff and Human CRISPRa ERROR: TCP non-blocking connect() to hgdownload.soe.ucsc.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://hgdownload.soe.ucsc.edu/hubs/neuroDiffCrispr/hubNeuroDiffCrispr.txt Debug Help hg19, panTro4, ponAbe2, rheMac8
ReMap Regulatory Atlas ERROR: TCP non-blocking connect() to pedagogix-tagc.univ-mrs.fr timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://pedagogix-tagc.univ-mrs.fr/remap/hubDirectory/trackhub/hub.txt Debug Help hg38
Ensembl Regulatory Build ERROR: Couldn't open http://ngs.sanger.ac.uk/production/ensembl/regulation/hub.txt Debug Help hg38, hg19, mm10
UniProt Features ERROR: ftp server response timed out > 1000000 microsec Can't get data socket for ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/genome_annotation_tracks/UP000005640_9606_hub/genomes.txt Debug Help hg38
Peterhof_yeasts ERROR: TCP non-blocking connect() to public.dobzhanskycenter.ru timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://public.dobzhanskycenter.ru/PeterhofYeastHub/hub.txt Debug Help [+] sacCer3, 1B_D1606_spades...
Roadmap Epigenomics Data Complete Collection at Wash U VizHub ERROR: TCP non-blocking connect() to vizhub.wustl.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://vizhub.wustl.edu/VizHub/RoadmapReleaseAll.txt Debug Help hg19
Principal Splice Isoforms APPRIS ERROR: TCP non-blocking connect() to apprisws.bioinfo.cnio.es timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://apprisws.bioinfo.cnio.es/trackHub/hub.txt Debug Help [+] hg38, hg19, mm10, danRer10, rn6, susScr3, panTro4, dm6...
C_elegans_isolates ERROR: TCP non-blocking connect() to waterston.gs.washington.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://waterston.gs.washington.edu/trackhubs/isolates/hub.txt Debug Help [+] CB4856Princeton_JR-contig...
Umap and Bismap mappability Uniquely mappable regions of genome and methylome hg38, hg19, mm9, mm10
FANTOM5 RIKEN FANTOM5 Phase1 and Phase2 data hg38, mm10, hg19, mm9, canFam3, rn6, rheMac8
ChromosomeAssembliesGR ERROR: TCP non-blocking connect() to sftp.rvc.ac.uk timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://sftp.rvc.ac.uk/rvcpaper/birdsHUB/hub.txt Debug Help colLiv2, galGal4, falPer2
MGI Alleles and Phenotypes ERROR: TCP non-blocking connect() to www.informatics.jax.org timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://www.informatics.jax.org/downloads/TrackHubs/hub.txt Debug Help mm10
Seq-data on mm9 NS5 cells Set of sequencing data on mm9 NS5 cells mm9
BrainEpigenomeHub DNA methylation, chromatin accessibility, and gene expression data from NeuN flow-sorted human brain samples hg19
EPD Viewer Hub ERROR: TCP non-blocking connect() to epd.vital-it.ch timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://epd.vital-it.ch/ucsc/epdHubCustomSpecies/epdHubCustomSpecies.txt Debug Help hg19, mm9, pfa2, amel5, araTha1, zm3, spo2
IDEAS roadmap 20states ERROR: TCP non-blocking connect() to bx.psu.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://bx.psu.edu/~yuzhang/Roadmap_ideas/ideas_hub.txt Debug Help hg19
Human Islet lncRNAs ERROR: TCP non-blocking connect() to www.imperial.ac.uk timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://www.imperial.ac.uk/medicine/beta-cell-genome-regulation-laboratory/data/HILNCs/HILNCs.txt Debug Help hg19
Broad Improved Canine Annotation v1 ERROR: netHttpConnect: url (ftp://anonymous:x%40genome.ucsc.edu@ftp.broadinstitute.orgpub/vgb/dog/trackHub/hub.txt) is not for http. Debug Help canFam3
Porcine DNA methylation ERROR: TCP non-blocking connect() to public.hpcagrogenomics.wur.nl timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://public.hpcagrogenomics.wur.nl/ABGC/Track_Hubs/Chankyu/hub.txt Debug Help susScr3
Ultraconserved Elements ERROR: TCP non-blocking connect() to genome-test.cse.ucsc.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://genome-test.cse.ucsc.edu/~hiram/hubs/GillBejerano/hub.txt Debug Help hg19
Promoterome CAGE and nucleosome positioning ERROR: TCP non-blocking connect() to trackhub.genereg.net timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://trackhub.genereg.net/promoterome/hub.txt Debug Help danRer7
JASPAR 2018 TFBS ERROR: TCP non-blocking connect() to expdata.cmmt.ubc.ca timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://expdata.cmmt.ubc.ca/JASPAR/UCSC_tracks/hub.txt Debug Help hg19, hg38, ce10, dm6, sacCer3, danRer10, mm10
FaceBase Hub Comprehensive craniofacial research data from FaceBase.org mm9, mm10, hg18, hg19
WormBase ERROR: TCP non-blocking connect() to hubs.yllb.de timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://hubs.yllb.de/pub/databases/wormbase/releases/current-production-release/MULTI_SPECIES/hub/hub.txt Debug Help [+] brenneri, japonica, remanei, ovolvulus, briggsae...
Roadmap Epigenomics Integrative Analysis Hub Roadmap Epigenomics Integrative Analysis Hub at Washington University in St. Louis hg19
Ensembl Regulatory Build ERROR: TCP non-blocking connect() to ftp.ensembl.org timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://ftp.ensembl.org/pub/papers/regulation/hub.txt Debug Help hg38, hg19, mm10
LIBD Human DLPFC Development RNAseq data across human brain development by age group from LIBD hg19
Blueprint Hub ERROR: TCP non-blocking connect() to ftp.ebi.ac.uk timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://ftp.ebi.ac.uk/pub/databases/blueprint/releases/current_release/homo_sapiens/hub/hub.txt Debug Help hg38
GTEx Analysis Hub ERROR: TCP non-blocking connect() to hgdownload.soe.ucsc.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://hgdownload.soe.ucsc.edu/hubs/gtexAnalysis/hub.txt Debug Help hg19, hg38
FANTOM5 CAGE RECLU DATA ERROR: TCP non-blocking connect() to fantom.gsc.riken.jp timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://fantom.gsc.riken.jp/5/suppl/Ohmiya_et_al_2014/data/hub.txt Debug Help hg19, hg18
Translation Initiation Sites (TIS) ERROR: TCP non-blocking connect() to gengastro.med.tu-dresden.de timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://gengastro.med.tu-dresden.de/suppl/footprint/Hub/tisHub.txt Debug Help hg19
LNCipedia 5.2 LNCipedia 5.2 - A comprehensive compendium of human long non-coding RNAs hg19, hg38
rfam12_ncRNA ERROR: TCP non-blocking connect() to ftp.ebi.ac.uk timed-out in select() after 10000 milliseconds - Cancelling! Can't get data socket for ftp://ftp.ebi.ac.uk/pub/databases/Rfam/12.0/genome_browser_hub/S_cerevisiae/trackDb.txt Debug Help hg38, mm10, ce10, galGal4, ci2, danRer7, dm6, sacCer3
Plants ERROR: TCP non-blocking connect() to genome-test.gi.ucsc.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt Debug Help araTha1, braRap1, ricCom1
DASHR v2.0 Hub ERROR: TCP non-blocking connect() to dashr2.lisanwanglab.org timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://dashr2.lisanwanglab.org/DASHRv2/tracks/DASHR2_hub.txt Debug Help hg19, hg38
GRC Genome Issues under Review ERROR: TCP non-blocking connect() to ngs.sanger.ac.uk timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://ngs.sanger.ac.uk/production/grit/track_hub/hub.txt Debug Help hg38, hg19, mm10, mm9, danRer7, danRer10, danRer11
Ultraconserved Elements ERROR: TCP non-blocking connect() to genome-test.gi.ucsc.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://genome-test.gi.ucsc.edu/~hiram/hubs/GillBejerano/hub.txt Debug Help hg19
Cancer Genomics Tracks TCGA and ICGC Cancer Mutations, TCGA Expression, Immune Epitopes Database (IEDB), Cancer Immunity Peptides Database, Dienstmann Variant/Cancer database, CIVIC, MyCancerGenome.org, OncoKB hg19
Croc and Bird Hub ERROR: Unsupported type 'halSnake' in hub https://s3-us-west-2.amazonaws.com/croc-paper-hub/hub.txt genome hub_27_allMis2 track snakefalChe1 Debug Help [+] allMis2, Anc00, Anc01, Anc02, Anc03, Anc04, Anc06...
dbRIP_Hub ERROR: TCP non-blocking connect() to dbrip.org timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://dbrip.org/dbRIPHub/hub.txt Debug Help hg19, hg38
mm9.SMC1.ChIAPET ERROR: TCP non-blocking connect() to younglab.wi.mit.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://younglab.wi.mit.edu/mESC_ChIAPET_hub/hub.txt Debug Help mm9
454 K562andHelaS3RNAseq ERROR: TCP non-blocking connect() to web.stanford.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://web.stanford.edu/~htilgner/2012_454paper/data/hub.txt Debug Help hg19
EcoliCompHub ERROR: TCP non-blocking connect() to genome-test.cse.ucsc.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://genome-test.cse.ucsc.edu/~nknguyen/ecoli/publicHubs/pangenome/hub.txt Debug Help [+] EscherichiaColi042Uid161985...
Croc and Bird Hub ERROR: TCP non-blocking connect() to genome-test.soe.ucsc.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://genome-test.soe.ucsc.edu/~jcarmstr/crocBrowserRC2/hub.txt Debug Help [+] allMis2, Anc00, Anc01, Anc02, Anc03, Anc04, Anc06...
ZebrafishGenomics ERROR: TCP non-blocking connect() to research.nhgri.nih.gov timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://research.nhgri.nih.gov/manuscripts/Burgess/zebrafish/downloads/NHGRI-1/hub.txt Debug Help danRer10, danRer7
Vista Enhancers ERROR: TCP non-blocking connect() to portal.nersc.gov timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://portal.nersc.gov/dna/RD/ChIP-Seq/VISTA_enhancer_e/VistaEnhancerTrackHub/hub.txt Debug Help hg19, mm9, mm10
Human cellular microRNAome ERROR: TCP non-blocking connect() to raw.githubusercontent.com timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://raw.githubusercontent.com/mhalushka/miRNA-UCSC-hub/master/hub.txt Debug Help hg38
Cotney Lab Human Craniofacial Epigenomics Human Embryonic Craniofacial Tissue Epigenomic Data and Chromatin State Segmentations from the Cotney Lab at UConn Health hg19, mm9
Mouse strain assemblies Assembly and alignment data for 16 different mouse strains plus rat. [+] mm10, rn6, 129S1_SvImJ, WSB_EiJ, SPRET_EiJ, AKR_J...
Human cellular microRNAome barCharts Evaluation of >10 billion small RNA-seq reads from 78 primary cell types and 42 cancer or immortalized cell lines from 3 main studies. hg38
Cancer Genomics Tracks TCGA and ICGC Cancer Mutations, TCGA Expression, Immune Epitopes Database (IEDB), Cancer Immunity Peptides Database, Dienstmann Variant/Cancer database, CIVIC, MyCancerGenome.org, OncoKB hg19
Porcine DNA methylation and gene transcription ERROR: getaddrinfo() error on hostName=public.hpcagrogenomics.wur.nl: Name or service not known Couldn't open http://public.hpcagrogenomics.wur.nl/ABGC/Track_Hubs/TJ_Tabasco/hub.txt Debug Help susScr3
Hippocampal DNA methylation and gene transcription ERROR: getaddrinfo() error on hostName=public.hpcagrogenomics.wur.nl: Name or service not known Couldn't open http://public.hpcagrogenomics.wur.nl/ABGC/Track_Hubs/Cognition/hub.txt Debug Help susScr3
Cancer genome polyA site & usage ERROR: getaddrinfo() error on hostName=johnlab.org: Temporary failure in name resolution Couldn't open http://johnlab.org/xpad/Hub/UCSC.txt Debug Help hg19
DASHR small ncRNA Hub ERROR: TCP non-blocking connect() to lisanwanglab.org timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://lisanwanglab.org/DASHR/tracks/hub.txt Debug Help hg19
dan_rer ZGA Hub UCSC Hub for transcripts detected via long-read seq in Zebrafish during ZGA danRer10
DNA Methylation ERROR: TCP non-blocking connect() to smithlab.usc.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://smithlab.usc.edu/trackdata/methylation/hub.txt Debug Help [+] hg38, hg19, hg18, mm9, mm10, panTro2, panTro4, ponAbe2...
ChIP-seq data track HUBs from MSC cells from GSE79815 ERROR: Couldn't open https://biochem.wisc.edu/sites/default/files/labs/pike/genome-ucsc/GSE79815_MSC_HUB/hub.txt Debug Help mm9
lncRNA in Breast Cancer ERROR: TCP non-blocking connect() to pecan.swmed.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://pecan.swmed.edu/public/breast_cancer_lncrna_pmid_26236012/hub.txt Debug Help hg19
UCD Methylation ERROR: TCP non-blocking connect() to lasallelab.genomecenter.ucdavis.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://lasallelab.genomecenter.ucdavis.edu/UCSChub/hub.txt Debug Help [+] hg19, hg18, mm10, mm9, bosTau7, bosTau6, canFam3...
CEMT (CEEHRC) ERROR: TCP non-blocking connect() to www.bcgsc.ca timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://www.bcgsc.ca/downloads/edcc/data/CEMT/hub/bcgsc_datahub.txt Debug Help hg38, hg19
Plants ERROR: TCP non-blocking connect() to genome-test.cse.ucsc.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://genome-test.cse.ucsc.edu/~hiram/hubs/Plants/hub.txt Debug Help araTha1, braRap1, ricCom1
Porcine DNA methylation ERROR: TCP non-blocking connect() to faang.abgc.asg.wur.nl timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://faang.abgc.asg.wur.nl/Track_Hubs/Chankyu/hub.txt Debug Help susScr3
CESAR Gene Mappings ERROR: TCP non-blocking connect() to bds.mpi-cbg.de timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://bds.mpi-cbg.de/hillerlab/CESAR/trackHub/hub.txt Debug Help [+] bosTau7, ailMel1, allMis1, anoCar2, calJac3...
GeneHancer enhancers GeneHancer: genome-wide integration of enhancers and target genes in GeneCards hg38, hg19
ENCODE Analysis Hub ERROR: TCP non-blocking connect() to ftp.ebi.ac.uk timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://ftp.ebi.ac.uk/pub/databases/ensembl/encode/integration_data_jan2011/hub.txt Debug Help hg19
McGill EMC (CEEHRC) ERROR: TCP non-blocking connect() to epigenomesportal.ca timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://epigenomesportal.ca/hub/hub.txt Debug Help hg19
Peptide evidences CNIO ERROR: TCP non-blocking connect() to apprisws.bioinfo.cnio.es timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://apprisws.bioinfo.cnio.es/trackHubPROTEO/hub.txt Debug Help hg38, hg19
human p53 Binding And Expression Resource (BAER) hub human p53 ChIP-seq coverage depth (tracks) & SISSRs peak calls with associated differential gene expression from published data as of May 2015 hg19
PhyloCSF Evolutionary protein-coding potential as measured by PhyloCSF hg19, hg38, mm10, galGal4, dm6, ce11
Porcine DNA methylation and gene transcription ERROR: TCP non-blocking connect() to faang.abgc.asg.wur.nl timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://faang.abgc.asg.wur.nl/Track_Hubs/TJ_Tabasco/hub.txt Debug Help susScr3
iPSCORE_RPE ERROR: Couldn't open http://flh1.ucsd.edu/RPE_public/iPSCORE_RPE/hub.txt Debug Help hg19
miRcode microRNA sites ERROR: TCP non-blocking connect() to www.mircode.org timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://www.mircode.org/ucscHub/hub.txt Debug Help hg19
GTEx RNA-seq Signal Hub ERROR: Couldn't open http://hgdownload.soe.ucsc.edu/hubs/gtex/hg19/trackDb.txt Debug Help hg19, hg38
Broad Improved Canine Annotation v1 Broad Institute CanFam3 Improved Annotation Data v1 canFam3
EcoliCompHubWtDups ERROR: Couldn't open http://genome-test.cse.ucsc.edu/~nknguyen/ecoli/publicHubs/pangenomeWithDups/hub.txt Debug Help [+] EscherichiaColi042Uid161985...
UMassMed ZHub ERROR: TCP non-blocking connect() to zlab-trackhub.umassmed.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://zlab-trackhub.umassmed.edu/shulhah/hub.txt Debug Help hg19
CPTAC Hub v1 ERROR: TCP non-blocking connect() to openslice.fenyolab.org timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://openslice.fenyolab.org/tracks/CPTAC/cptac/v1/hub.txt Debug Help hg19
Primate x4 NeuroDiff and Human CRISPRa ERROR: TCP non-blocking connect() to hgdownload.soe.ucsc.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://hgdownload.soe.ucsc.edu/hubs/neuroDiffCrispr/hubNeuroDiffCrispr.txt Debug Help hg19, panTro4, ponAbe2, rheMac8
ReMap Regulatory Atlas ERROR: TCP non-blocking connect() to pedagogix-tagc.univ-mrs.fr timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://pedagogix-tagc.univ-mrs.fr/remap/hubDirectory/trackhub/hub.txt Debug Help hg38
Ensembl Regulatory Build ERROR: Couldn't open http://ngs.sanger.ac.uk/production/ensembl/regulation/hub.txt Debug Help hg38, hg19, mm10
UniProt Features ERROR: ftp server response timed out > 1000000 microsec Can't get data socket for ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/genome_annotation_tracks/UP000005640_9606_hub/genomes.txt Debug Help hg38
Peterhof_yeasts ERROR: TCP non-blocking connect() to public.dobzhanskycenter.ru timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://public.dobzhanskycenter.ru/PeterhofYeastHub/hub.txt Debug Help [+] sacCer3, 1B_D1606_spades...
Roadmap Epigenomics Data Complete Collection at Wash U VizHub ERROR: TCP non-blocking connect() to vizhub.wustl.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://vizhub.wustl.edu/VizHub/RoadmapReleaseAll.txt Debug Help hg19
Principal Splice Isoforms APPRIS ERROR: TCP non-blocking connect() to apprisws.bioinfo.cnio.es timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://apprisws.bioinfo.cnio.es/trackHub/hub.txt Debug Help [+] hg38, hg19, mm10, danRer10, rn6, susScr3, panTro4, dm6...
C_elegans_isolates ERROR: TCP non-blocking connect() to waterston.gs.washington.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://waterston.gs.washington.edu/trackhubs/isolates/hub.txt Debug Help [+] CB4856Princeton_JR-contig...
Umap and Bismap mappability Uniquely mappable regions of genome and methylome hg38, hg19, mm9, mm10
FANTOM5 RIKEN FANTOM5 Phase1 and Phase2 data hg38, mm10, hg19, mm9, canFam3, rn6, rheMac8
ChromosomeAssembliesGR ERROR: TCP non-blocking connect() to sftp.rvc.ac.uk timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://sftp.rvc.ac.uk/rvcpaper/birdsHUB/hub.txt Debug Help colLiv2, galGal4, falPer2
MGI Alleles and Phenotypes ERROR: TCP non-blocking connect() to www.informatics.jax.org timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://www.informatics.jax.org/downloads/TrackHubs/hub.txt Debug Help mm10
Seq-data on mm9 NS5 cells Set of sequencing data on mm9 NS5 cells mm9
BrainEpigenomeHub DNA methylation, chromatin accessibility, and gene expression data from NeuN flow-sorted human brain samples hg19
EPD Viewer Hub ERROR: TCP non-blocking connect() to epd.vital-it.ch timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://epd.vital-it.ch/ucsc/epdHubCustomSpecies/epdHubCustomSpecies.txt Debug Help hg19, mm9, pfa2, amel5, araTha1, zm3, spo2
IDEAS roadmap 20states ERROR: TCP non-blocking connect() to bx.psu.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://bx.psu.edu/~yuzhang/Roadmap_ideas/ideas_hub.txt Debug Help hg19
Human Islet lncRNAs ERROR: TCP non-blocking connect() to www.imperial.ac.uk timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://www.imperial.ac.uk/medicine/beta-cell-genome-regulation-laboratory/data/HILNCs/HILNCs.txt Debug Help hg19
Broad Improved Canine Annotation v1 ERROR: netHttpConnect: url (ftp://anonymous:x%40genome.ucsc.edu@ftp.broadinstitute.orgpub/vgb/dog/trackHub/hub.txt) is not for http. Debug Help canFam3
Porcine DNA methylation ERROR: TCP non-blocking connect() to public.hpcagrogenomics.wur.nl timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://public.hpcagrogenomics.wur.nl/ABGC/Track_Hubs/Chankyu/hub.txt Debug Help susScr3
Ultraconserved Elements ERROR: TCP non-blocking connect() to genome-test.cse.ucsc.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://genome-test.cse.ucsc.edu/~hiram/hubs/GillBejerano/hub.txt Debug Help hg19
Promoterome CAGE and nucleosome positioning ERROR: TCP non-blocking connect() to trackhub.genereg.net timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://trackhub.genereg.net/promoterome/hub.txt Debug Help danRer7
JASPAR 2018 TFBS ERROR: TCP non-blocking connect() to expdata.cmmt.ubc.ca timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://expdata.cmmt.ubc.ca/JASPAR/UCSC_tracks/hub.txt Debug Help hg19, hg38, ce10, dm6, sacCer3, danRer10, mm10
FaceBase Hub Comprehensive craniofacial research data from FaceBase.org mm9, mm10, hg18, hg19
WormBase ERROR: TCP non-blocking connect() to hubs.yllb.de timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://hubs.yllb.de/pub/databases/wormbase/releases/current-production-release/MULTI_SPECIES/hub/hub.txt Debug Help [+] brenneri, japonica, remanei, ovolvulus, briggsae...
Roadmap Epigenomics Integrative Analysis Hub Roadmap Epigenomics Integrative Analysis Hub at Washington University in St. Louis hg19
Ensembl Regulatory Build ERROR: TCP non-blocking connect() to ftp.ensembl.org timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://ftp.ensembl.org/pub/papers/regulation/hub.txt Debug Help hg38, hg19, mm10
LIBD Human DLPFC Development RNAseq data across human brain development by age group from LIBD hg19
Blueprint Hub ERROR: TCP non-blocking connect() to ftp.ebi.ac.uk timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://ftp.ebi.ac.uk/pub/databases/blueprint/releases/current_release/homo_sapiens/hub/hub.txt Debug Help hg38
GTEx Analysis Hub ERROR: TCP non-blocking connect() to hgdownload.soe.ucsc.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://hgdownload.soe.ucsc.edu/hubs/gtexAnalysis/hub.txt Debug Help hg19, hg38
FANTOM5 CAGE RECLU DATA ERROR: TCP non-blocking connect() to fantom.gsc.riken.jp timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://fantom.gsc.riken.jp/5/suppl/Ohmiya_et_al_2014/data/hub.txt Debug Help hg19, hg18
Translation Initiation Sites (TIS) ERROR: TCP non-blocking connect() to gengastro.med.tu-dresden.de timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://gengastro.med.tu-dresden.de/suppl/footprint/Hub/tisHub.txt Debug Help hg19
LNCipedia 5.2 LNCipedia 5.2 - A comprehensive compendium of human long non-coding RNAs hg19, hg38
rfam12_ncRNA ERROR: TCP non-blocking connect() to ftp.ebi.ac.uk timed-out in select() after 10000 milliseconds - Cancelling! Can't get data socket for ftp://ftp.ebi.ac.uk/pub/databases/Rfam/12.0/genome_browser_hub/S_cerevisiae/trackDb.txt Debug Help hg38, mm10, ce10, galGal4, ci2, danRer7, dm6, sacCer3
Plants ERROR: TCP non-blocking connect() to genome-test.gi.ucsc.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://genome-test.gi.ucsc.edu/~hiram/hubs/Plants/hub.txt Debug Help araTha1, braRap1, ricCom1
DASHR v2.0 Hub ERROR: TCP non-blocking connect() to dashr2.lisanwanglab.org timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://dashr2.lisanwanglab.org/DASHRv2/tracks/DASHR2_hub.txt Debug Help hg19, hg38
GRC Genome Issues under Review ERROR: TCP non-blocking connect() to ngs.sanger.ac.uk timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://ngs.sanger.ac.uk/production/grit/track_hub/hub.txt Debug Help hg38, hg19, mm10, mm9, danRer7, danRer10, danRer11
Ultraconserved Elements ERROR: TCP non-blocking connect() to genome-test.gi.ucsc.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://genome-test.gi.ucsc.edu/~hiram/hubs/GillBejerano/hub.txt Debug Help hg19
Cancer Genomics Tracks TCGA and ICGC Cancer Mutations, TCGA Expression, Immune Epitopes Database (IEDB), Cancer Immunity Peptides Database, Dienstmann Variant/Cancer database, CIVIC, MyCancerGenome.org, OncoKB hg19
Croc and Bird Hub ERROR: Unsupported type 'halSnake' in hub https://s3-us-west-2.amazonaws.com/croc-paper-hub/hub.txt genome hub_27_allMis2 track snakefalChe1 Debug Help [+] allMis2, Anc00, Anc01, Anc02, Anc03, Anc04, Anc06...
dbRIP_Hub ERROR: TCP non-blocking connect() to dbrip.org timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://dbrip.org/dbRIPHub/hub.txt Debug Help hg19, hg38
mm9.SMC1.ChIAPET ERROR: TCP non-blocking connect() to younglab.wi.mit.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://younglab.wi.mit.edu/mESC_ChIAPET_hub/hub.txt Debug Help mm9
454 K562andHelaS3RNAseq ERROR: TCP non-blocking connect() to web.stanford.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://web.stanford.edu/~htilgner/2012_454paper/data/hub.txt Debug Help hg19
EcoliCompHub ERROR: TCP non-blocking connect() to genome-test.cse.ucsc.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://genome-test.cse.ucsc.edu/~nknguyen/ecoli/publicHubs/pangenome/hub.txt Debug Help [+] EscherichiaColi042Uid161985...
Croc and Bird Hub ERROR: TCP non-blocking connect() to genome-test.soe.ucsc.edu timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://genome-test.soe.ucsc.edu/~jcarmstr/crocBrowserRC2/hub.txt Debug Help [+] allMis2, Anc00, Anc01, Anc02, Anc03, Anc04, Anc06...
ZebrafishGenomics ERROR: TCP non-blocking connect() to research.nhgri.nih.gov timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://research.nhgri.nih.gov/manuscripts/Burgess/zebrafish/downloads/NHGRI-1/hub.txt Debug Help danRer10, danRer7
Vista Enhancers ERROR: TCP non-blocking connect() to portal.nersc.gov timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://portal.nersc.gov/dna/RD/ChIP-Seq/VISTA_enhancer_e/VistaEnhancerTrackHub/hub.txt Debug Help hg19, mm9, mm10
Human cellular microRNAome ERROR: TCP non-blocking connect() to raw.githubusercontent.com timed-out in select() after 10000 milliseconds - Cancelling! Couldn't open http://raw.githubusercontent.com/mhalushka/miRNA-UCSC-hub/master/hub.txt Debug Help hg38
Cotney Lab Human Craniofacial Epigenomics Human Embryonic Craniofacial Tissue Epigenomic Data and Chromatin State Segmentations from the Cotney Lab at UConn Health hg19, mm9
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