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The International HapMap Consortium. A haplotype map of the human genome. Nature. 2005 Oct 27;437(7063):1299-320.
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Bejerano G, Friedman N, Tishby N. Efficient Exact p-Value Computation for Small Sample, Sparse and Surprising Categorical Data. J Comput Biol. 2004;11(5):867-86.
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Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, Mattick JS, Haussler D. Ultraconserved elements in the human genome. Science. 2004 May 28;304(5675):1321-5. [reprint] [supplement] [website]
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Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, Haussler D, Kent WJ. The UCSC Table Browser data retrieval tool. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D493-6.
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DeGuzman V, Winters-Hilt S, Solbrig A, Sughrue W, Deamer D, Haussler D, Akeson M. Sequence-dependent fraying of single DNA molecules measured in real time at 5 angstrom resolution using an ion channel. Biophys J. 2003 84(2):490A-490A Part 2 Suppl.
Furey TS, Haussler D. Integration of the cytogenic map with the draft human genome sequence. Hum Mol Genet. 2003 May 1;12(9):1037-1044.
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Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D. Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes. Proc Natl Acad Sci USA. 2003 Sep 30;100(20):11484-9.
Margulies EH, Blanchette M; NISC Comparative Sequencing Program; Haussler D, Green ED. Identification and characterization of multi-species conserved sequences. Genome Res. 2003 Dec;13(12):2507-18.
Pollard KS, van der Laan MJ. Multiple testing for gene expression data: an investigation of null distributions with consequences for the permutation test. Proceedings of the 2003 International MultiConference in Computer Science and Engineering, METMBS'03 Conference, pp.3-9.
Roskin KM, Diekhans M, Haussler D. Scoring two-species local alignments to try to statistically separate neutrally evolving from selected DNA segments. Proc. 7th Int'l Conf. on Research in Computational Molecular Biology (RECOMB '03):257-266.
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Wang H, Hubbell E, Hu JS, Mei G, Cline M, Lu G, Clark T, Siani-Rose MA, Ares M, Kulp DC, Haussler D. Gene structure-based splice variant deconvolution using a microarray platform. Proc. of ISMB 2003 and Bioinformatics. 2003;19 Suppl 1:i315-22.
Winters-Hilt S, Vercoutere W, DeGuzman VS, Deamer D, Akeson M, Haussler D. Highly accurate classification of Watson-Crick basepairs on termini of single DNA molecules. Biophys J. 2003 Feb;84(2 Pt 1):967-76.
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Cline MS, Karplus K, Lathrop RH, Smith TF, Rogers RG Jr, Haussler D. Information theoretic dissection of pairwise contact potentials. Proteins. 2002 Oct 1;49(1):7-14.
Karchin R, Karplus K, Haussler D. Classifying G-protein coupled receptors with support vector machines. Bioinformatics. 2002 Jan;18(1):147-59.
Karolchik D, Kent WJ. The UCSC Genome Browser. Curr Protoc Bioinformatics. 2002;Chapter 1:Unit 1.4.
Kent WJ. BLAT - the BLAST-like alignment tool. Genome Res. 2002 Apr;12(4):656-64.
Kent WJ, Brumbaugh H. autoSql and autoXml: code generators from the Genome Project. Linux J. 2002;99:68-77.
Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, Zahler AM, Haussler D. The human genome browser at UCSC. Genome Res. 2002 Jun;12(6):996-1006.
Mouse Genome Sequencing Consortium. Initial sequencing and comparative analysis of the mouse genome. Nature. 2002 Dec 5;420(6915):520-62.
Roskin KM, Diekhans M, Kent WJ, Haussler D. Score functions for assessing conservation in locally aligned regions of DNA from two species. UCSC Tech Report UCSC-CRL-02-30 Jul. 2002.
Wolfsberg TG, Wetterstrand KA, Guyer MS, Collins FS, Baxevanis AD. A user's guide to the human genome. Nat Genet. 2002 Sep;32 Suppl:1-79.
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International Human Genome Mapping Consortium. A physical map of the human genome. Nature. 2001 Feb 15;409(6822):934-941.
Kent WJ, Haussler D. Assembly of the working draft of the human genome with gigAssembler. Genome Res. 2001 Sep;11(9)1541-1548.
Pavlidis P, Furey TS, Liberto M, Haussler D, Grundy WN. Promoter region-based classification of genes. Pac Symp Biocomput. 2001;151-63.
Brown MP, Grundy WN, Lin D, Cristianini N, Sugnet CW, Furey TS, Ares M Jr, Haussler D. Knowledge-based analysis of microarray gene expression data using support vector machines. Proc Natl Acad Sci USA. 2000 Jan 4;97(1):262-7.
Furey TS, Cristianini N, Duffy N, Bednarski DW, Schummer M, Haussler D. Support vector machine classification and validation of cancer tissue samples using microarray expression data. Bioinformatics. 2000 Oct;16(10):906-14.